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Arthropods Bacteria
Earthworms Fungi
Nematodes
Protozoa
An incredible
diversity of organisms make up the soil food web.
They range in size from the tiniest one-celled bacteria,
algae, fungi, and protozoa, to the more complex nematodes
and micro-arthropods, to the visible earthworms, insects,
small vertebrates, and plants. Growing and reproducing
are the primary activities of all living organisms.
As individual plants and soil organisms work to survive,
they depend on interactions with each other for sustenance,
both directly and indirectly. By-products from growing
roots and plant residue feed soil organisms. In turn,
soil organisms support plant health as they decompose
organic matter, cycle nutrients, enhance soil structure,
and control the populations of soil organisms including
crop pests in a delicate game of check and balance.
Other organisms enter into a symbiotic relationship
with plants resulting in a direct correlation between
soil organism and plant process. As these organisms
eat, grow, and move through the soil, they make it
possible to have clean water, clean air, healthy plants
and soil, and moderated water flow.

Arthropods
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Many bugs,
known as arthropods, make their home in the
soil. They get their name from their jointed
(arthros) legs (podos). Arthropods are invertebrates,
that is, they have no backbone, and rely instead
on an external covering called an exoskeleton.
Arthropods
range in size from microscopic to several inches
in length. They include insects, such as springtails,
beetles, and ants; crustaceans such as sowbugs;
arachnids such as spiders and mites; myriapods,
such as centipedes and millipedes; and scorpions.
Nearly
every soil is home to many different arthropod
species. Certain row-crop soils contain
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several
dozen species of arthropods in a square mile. Several
thousand different species may live in a square mile
of forest soil. Arthropods can be grouped as shredders,
predators, herbivores, and fungal-feeders, based on
their functions in soil. Most soil-dwelling arthropods
eat fungi, worms, or other arthropods. Root-feeders
and dead-plant shredders are less abundant. As they
feed, arthropods aerate and mix the soil, regulate
the population size of other soil organisms, and shred
organic material.
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Bacteria
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Bacteria
are tiny, one-celled organisms - generally 4/100,000
of an inch wide (1 µm) and somewhat longer
in length. What bacteria lack in size, they
make up for in numbers. A teaspoon of productive
soil generally contains between 100 million
and 1 billion bacteria. That is as much mass
as two cows per acre.
Bacteria
put the tang in yogurt and the sour in sourdough
bread. They are vital to the food web in
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many environments,
including the soil and its processes. Bacteria are one
of nature's fertility partners. Certain species of beneficial
bacteria promote healthy plant growth and protect plant
root systems from soil borne disease organism. They
also aid in the decomposition
| Decomposition
: The biochemical breakdown of organic
matter into organic compounds and nutrients,
and ultimately into its original components.
Results in humus, the lowest form of organic
decomposition. |
of organic matter
helping make essential soil nutrients available to plants
and, in turn, improve the physical properties of the
soil itself. These "good" bacteria are called
rhizobacteria, because they occur in the rhizosphere.
These bacteria produce a variety of chemicals that stimulate
plant growth. The bacteria grow and persist in the rhizosphere
of non-woody roots. While common in natural settings,
their populations are often very low or absent in nursery
potting soils, urban environments and disturbed manmade
landscapes.
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Bacteria
fall into four functional groups. Most are "decomposers"
that consume simple carbon compounds, such as
root exudates and fresh plant litter. By this
process, bacteria convert energy in soil organic
matter into forms useful to the rest of the
organisms in the soil food web. A number of
decomposers can break down pesticides and pollutants
in soil. Decomposers are especially important
in immobilizing, or retaining, nutrients in
their cells, thus preventing the loss of nutrients,
such as nitrogen, from the rooting zone.
A second
group of bacteria are the "mutualists"
that form partnerships with plants. The most
well known of this group are the nitrogen-fixing
bacteria called legumes. The third group of
bacteria is
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the "pathogens".
The bacterial pathogens include Xymomonas and
Erwinia species. And, they include species of
Agrobacterium that cause gall
| Gall
: Crown gall infection is caused by various
bacteria of the genus Agrobacterium. The disease
affects a wide range of plants including deciduous
fruits, vine and berry fruits, vegetables and
ornamentals. Within these groups of plants there
is no known cultivar resistance. The bacterium
infects the plant through a wound, usually at
ground level or on the roots, and transfers a
tumerogenic (cancerous) factor to some plant cells.
These cells then start dividing uncontrollably,
forming galls of undifferentiated tissue that
restrict the normal functions of the plant. |
formation
in plants. A fourth group, called "lithotrophs"
or "chemoautotrophs", obtains its energy from
compounds of nitrogen, sulfur, iron or hydrogen instead
of from carbon compounds. Some of these species are
important to nitrogen cycling and degradation of pollutants.
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Legumes
| Legumes:
Legumes are plants that can fix
nitrogen from the air to make nitrates.
Nitrate is nitrogen in a form available
to plants. Legumes, through pinkish colored
nodules on their roots, form a mutually
beneficial relationship with soilborne bacteria.
It the bacteria who are able to perform
the chemistry necessary for nitrogen fixation;
the plant pulls the nitrogen from the air
through stomata in its leaves and transfers
it to the bacteria via its phloem. In return,
the legume and the plants nearby are supplied
with the nitrates. However, if legumes are
fed nitrogen (in the form of fertilizer
or manure), they will cease to produce their
own. Legumes are heavy feeders of phosphorus,
potassium, magnesium, and calcium; so they
(or the crops that follow) may need feeding
if the soil is deficient in these nutrients.
Legumes are used as green manures. Common
examples are clover, vetch, soybeans, peas,
and alfalfa. |
are
plants that convert atmospheric nitrogen into
a usable form. Each legume species requires a
specific species of rhizobia to form nodules and
fix nitrogen. This relationship occurs in specialized
root tissue called nodules. Some legumes, such
as alfalfa, can produce enough ammonia to supply
all their nitrogen needs. The relationship between
the legume and rhizobia is symbiotic
| Symbiotic
relationship : A relationship between
two entities in which both benefit from
the collaboration. An example being mycchoriza
and plants. The antithesis of this is a
parasitic relationship in which the host
is fed upon by the parasitic entity. |
. The
bacteria invade plant root hairs and multiply
in the outer root tissue, similar to the relationshipbetween
plants and mycchorhizae fungi. The plant forms
tissue that acts as a |
protective enclosure
around the bacteria. The plant also supplies energy
to the bacteria from photosynthesis. For their part,
the bacteria convert nitrogen gas to ammonia in the
nodules. Legume plants include alfalfa, cowpeas, soybeans,
and peas, amongst others.
| The
Bacillus strain of bacteria can also be
utilized in the garden. Bacillus thuringiensis
(commonly known as 'Bt') is an insecticidal bacterium
mainly used to control caterpillars and fungus
gnat larvae by way of introducing plague in their
populations. Caterpillars must ingest it to be
effective so proper coverage of crop or soil should
be ensured.Bacillus subtilis is another
effective bacterium that controls most plant diseases,
such as bacterial spot, powdery mildew, rust,
gray mold, leaf blight, scab, and many more.
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Earthworms
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While not
vital to all healthy soil systems, worms contribute
to the overall health of the soil in multiple
ways:
Stimulate
microbial activity: Although earthworms
derive their nutrition from microorganisms,
many more microorganisms are present in their
feces or castings than in the organic matter
that they consume. As organic matter passes
through their intestines, it is fragmented and
inoculated with microorganisms.
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Increased microbial
activity facilitates the cycling of nutrients from
organic matter and their conversion into forms readily
taken up by plants.
Mix and aggregate
soil: As they consume organic matter and mineral
particles, earthworms tunnel through the soil effectively
mixing and redistributing materials in the soil zone.
Charles Darwin calculated that earthworms could move
large amounts of soil from the lower strata to the
surface and also carry organic matter down into deeper
soil layers. A large proportion of soil passes through
the guts of earthworms, and they can turn over the
top six inches (15 cm) of soil in ten to twenty years.
Increase infiltration:
Earthworms enhance porosity as they move through the
soil. Some species make permanent burrows deep into
the soil. These burrows can persist long after the
inhabitant has died, and can be a major conduit for
soil drainage, particularly under heavy rainfall.
At the same time, the burrows minimize surface water
erosion. The horizontal burrowing of other species
in the top several inches of soil increases overall
porosity and drainage.
Improve water-holding
capacity: By fragmenting organic matter, and increasing
soil porosity and aggregation, earthworms can significantly
increase the water-holding capacity of soils.
Provide channels
for root growth: The channels made by deep-burrowing
earthworms are lined with readily available nutrients
and make it easier for roots to penetrate deep into
the soil.
Bury and shred
plant residue: Plant and crop residue are gradually
buried by cast material deposited on the surface and
as earthworms pull surface residue into their burrows.
Vermicomposters
can be purchased in order to intensify the production
of worm castings. For more info on worms and
vermicomposting go here.
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Fungi
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The
mycorrhizae
| Mycorrhiza
: "Fungus roots" which are symbiotic
with the plant roots on which they occur.
This mycorrhiza relationship facilitates
the sharing of some of the plant's storehouse
of organic compounds (which are essential
to fungi, as they are to all living organisms).
In addition, water is exchanged along with
the organic compounds for assistance from
the fungus in the absorption of nutrients
like phosphorus and some other minerals.
There are endo- and ectomyccorhizae, the
endo- aiding in material uptake, the ecto-
forming a rhizosphere protecting the roots
from potential pathogens or diseases. |
(my-cor-ry-'zee)
group of fungi lives either on (ecti-) or in (endo-)
plant roots and act to extend the reach of root
hairs into the soil. By inoculating your
soil of media, myccorhizae and the plant enter
into a symbiotic relationship thereby increasing
the plant's uptake of water and nutrients, especially
in less fertile soils, while the fungi benefit
from plant association by taking nutrients and
carbohydrates from the plant roots they live in
or on. The superfine, root-like structures of
these fungi are more extensive and more effective
than plant root hairs at absorbing phosphorus,
and other nutrients as well. Phosphorus moves
slowly in soils but the fungi can absorb it much
faster than the plant alone can. This enhanced
root feeding makes it possible to reduce fertilizer
rates for plants having a healthy colony of |
mychorrhizae. With
ectomycorrhizaes the root system and the fungus mycelium
(comprised of individual
hyphae)
together form a rhizosphere
| Rhizosphere
: The soil near a living root, usually
applied to the zone around tiny fine absorbing
roots. The soil zone that surrounds and is influenced
by the roots of plants. |
in which
living conditions differ from that of the
| Mycelium
: The mass of interwoven filaments (hyphae)
that makes up the vegetative body of a fungus.
This is the portion of the fungus that absorbs
nutrients. |
surrounding.
| Hyphae
: A single tubular filament of a fungus
or any of the thread like parts making up the
mycelium of a fungus. |
The rhizosphere
contains, for example, almost always more bacteria than
other regions of the soil. With endomychorrizaes the
fungus actually penetrates the root itself with part
of the mycelium extends into the cortex cells and between
them while another part spreads out into the soil. Roots
colonized by mycorrhizae are less likely to be penetrated
by root-feeding nematodes since the pest cannot pierce
the thick fungal network. Mycorrhizae also produce hormones
| Hormone
: Chemical substance that controls the
growth and development of a plant. A substance
produced by one tissue and conveyed by the bloodstream
to another to effect physiological activity or
regulate development, such as growth or metabolism.
Acts as a signal. |
, antibiotics,
and vitamins; which enhance root growth and provide
disease suppression.
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relationship developed over millions of years.
During extreme periods, such as ice ages, throughout
history when plants have experienced a bottle-neck
in nutritional availability plants evolved to
accept benefits from certain aspects of its soil
environment in order to sustain themselves. Specifically,
those that developed a relationship with mycorrhizae
had a better chance of survival than those that
did not. The result is that most plants today
have a symbiotic beneficial relationship with
its fungal friends. While almost all plants benefit
from the presence of mycorrhizae, some do more
than others. Some plants including citrus, grapes,
avocados, and bananas, are dependent on mycorrhizae
fungi. Others that benefit from having them are
artichokes, melons, tomatoes, peppers, and squash. |
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In
soils where mychorrhizae have been killed off, an
inoculation may be beneficial. In healthy soils where
they already exist there will be little or no benefit
to adding more. There are dozens of mychorrizae species
in nature. Additionally, the species found on plant
roots may change as the plant matures. If those that
are available are of the correct species, and are
handled properly at all stages, they offer interesting
potential benefits to farmers in well-managed systems.
Generally it is preferred to inoculate with several
species rather than a single one.
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There are
other forms of beneficial fungi, such as Trichoderma,
which is a biocontrol that triggers plant defense
responses. |
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Nematodes
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Nematodes
are non-segmented worms typically 1/500 of an
inch (50 µm) in diameter and 1/20 of an
inch (1 mm) in length. Those few species responsible
for plant diseases have received a lot of attention,
but far less is known about
| Trophic
level : A group of organisms
that occupy the same position in a food
chain. |
the majority of the nematode community
that plays beneficial roles in soil.
An incredible
variety of nematodes function at several trophic
levels
of the soil food web. Some
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feed on the plants
and algae
| Algae
: Any of various chiefly aquatic, eukaryotic,
photosynthetic organisms, ranging in size from
single-celled forms to giant kelp. |
(first trophic
level); others are grazers that feed on bacteria
and fungi
(second trophic level); and some feed on other nematodes
(higher trophic levels).
| Bacteria
: Primitive, unicellular, microscopic
organisms that lack a cell nucleus and other organelles,
obtain soluble food by absorption, and reproduce
by simple cell division. They include the photosynthetic
cyanobacteria (formerly called blue-green algae),
and actinomycetes (filamentous bacteria that give
healthy soil its characteristic smell). T
hese are the most abundant of all organisms
--and the simplest (having only a single cell).
They are beneficial to decay mechanisms, but many
kinds are considered disease organisms. Examples
of bacterial diseases include blights and some
types of rot and wilt. |
| Fungus
: A non-photosythetic, chiefly multicellular
organism only able to use carbon, nitrogen, etc.
as starting materials for synthesis of its essential
foods. Some are good (mycchorizae), some are bad
(fusarium). |
Free-living nematodes can be divided into
five broad groups based on their diet. "Bacterial-feeders"
consume bacteria. "Fungal-feeders" feed
by puncturing the cell wall of fungi and sucking out
the internal contents. "Predatory nematodes"
eat all types of nematodes and protozoa. They are
also effective against fleas, flies, crickets, beetles,
moths, weevils, and many types of worms. They eat
smaller organisms whole, or attach themselves to the
cuticle of larger nematodes, scraping away until the
prey's internal body parts can be extracted. "Omnivores"
eat a variety of organisms or may have a different
diet at each life stage. "Root-feeders"
are plant parasites, and thus are not free-living
in the soil.
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Protazoa
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Protozoa
are single-celled animals that feed primarily
on bacteria, but also eat other protozoa, soluble
organic matter, and sometimes fungi. They are
several times larger than bacteria - ranging
from 1/5000 to 1/50 of an inch (5 to 500 µm)
in diameter. As they eat bacteria, protozoa
release excess nitrogen that can then be used
by plants and other members of the food web.
Protozoa
are classified into three groups based on their
shape: "Ciliates" are the largest
and
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move by means
of hair-like cilia. They eat the other two types of
protozoa, as well as bacteria. "Amoebae"
also can be quite large and move by means of a temporary
foot, or pseudopod. Amoebae are further divided into
testate amoebae (which make a shell-like covering)
and naked amoebae (without a covering). "Flagellates"
are the smallest of the protozoa and use a few whip-like
flagella to move.
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